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This PR is for faster reading of h5ad file (~18X faster).

Time
Original 74.79
Updated 4.09
Speedup 18.27

Testing was done in AWS m7i.24xlarge

  • Closes #
  • Tests included or not required because:
  • Release notes not necessary because:

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codecov bot commented Nov 14, 2024

Codecov Report

Attention: Patch coverage is 30.21583% with 97 lines in your changes missing coverage. Please review.

Project coverage is 58.27%. Comparing base (fa38823) to head (89c6c72).

Files with missing lines Patch % Lines
src/scanpy/readwrite.py 30.21% 97 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##             main    #3365       +/-   ##
===========================================
- Coverage   75.36%   58.27%   -17.10%     
===========================================
  Files         112      112               
  Lines       13219    13355      +136     
===========================================
- Hits         9963     7783     -2180     
- Misses       3256     5572     +2316     
Files with missing lines Coverage Δ
src/scanpy/readwrite.py 63.94% <30.21%> (-10.77%) ⬇️

... and 48 files with indirect coverage changes

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