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Bioconda package for PCGR

Status: Open.

#283 In sigven/pcgr;

· maxibor opened on Oct 28, 2025

MSI classifier: filter input variant callset by VAF, AD

Status: Open.

#282 In sigven/pcgr;

· SeanNesdoly opened on Oct 24, 2025

expected differences between "All" and a specific --tumor_site

Status: Open.

#277 In sigven/pcgr;

· rcorbett-match opened on Aug 25, 2025

Conda: use labels for dev releases

Status: Open.

#262 In sigven/pcgr;

· pdiakumis opened on Mar 6, 2025

Conda: deprecate OSX lockfile

enhancement

Status: Open.

#248 In sigven/pcgr;

· pdiakumis opened on Jul 15, 2024

Docker: move to GitHub Container Registry

enhancement

Status: Open.

#247 In sigven/pcgr;

· pdiakumis opened on Jul 15, 2024

Parallel instances

Status: Open.

#214 In sigven/pcgr;

· gitMakeCoffee opened on May 11, 2023

Feature: use single conda environment for PCGR

enhancement

Status: Open.

#183 In sigven/pcgr;

· pdiakumis opened on Feb 16, 2022

share idea of fusion "biomarker_mapping"

enhancement

Status: Open.

#133 In sigven/pcgr;

· 1seokyoo opened on Jul 27, 2021

Request: Cohort analysis

enhancement

Status: Open.

#93 In sigven/pcgr;

· adbeggs opened on Oct 21, 2019

gene fusion feature request.

enhancement

Status: Open.

#36 In sigven/pcgr;

· pl618 opened on May 19, 2018

Mutect2 output vcf FORMAT not accepted

Status: Open.

#22 In sigven/pcgr;

· zacshi opened on Apr 26, 2018