Skip to content

Issues: sirius-ms/sirius

Beta
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

47 Open 212 Closed
47 Open 212 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[BUG] - SEVERE: Your system does not ship with any instantiatable ILP solver. Please install either CLP, Gurobi or CPLEX to use SIRIUS. probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#265 opened Jun 3, 2025 by mcmk3
[BUG] - Job is 'stuck' error message on repeat in the log probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#264 opened May 27, 2025 by mbiscotti-hub
[BUG] - Custom Database fails in CLI mode probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#263 opened May 27, 2025 by mvisani
Selection is lost after compute and unit of RT in LC-MS tab feature request
#262 opened May 21, 2025 by JethroHemmann
Error with ILP solvers
#260 opened May 14, 2025 by J5886
Issue connecting to CSI:FingerID server in SIRIUS 6.1.0 probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#259 opened May 12, 2025 by jnmedinam
1
[BUG] - about the custom structural database probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#258 opened May 9, 2025 by qianyulia
Could not load bundled JRE
#257 opened May 7, 2025 by wjnz11
An error occurred while reading a saved .SIRIUS file and could not be opened probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#256 opened May 2, 2025 by Yuan-666-lab
[FEATURE] - Constructing MS/MS spectral database from MS1 database feature request
#255 opened Apr 30, 2025 by kuntuse
1
[BUG] - descriptive title... probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#254 opened Apr 30, 2025 by YuChiLin7051
[Question] - Can I view LC-MS by importing .mzML files after I computed .mgf file? probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#253 opened Apr 29, 2025 by AnqiXiong
[BUG] - missing top-XX for canopus probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#252 opened Apr 25, 2025 by chrboku
[Question] Output of CLI command different from documentation? (v6.1.1)
#251 opened Apr 17, 2025 by Coco501
4
Unmatched arguments from index 6: 'structure', '--database', 'pubchem' probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#250 opened Apr 14, 2025 by spzheng0908
3
SIRIUS score normalized
#249 opened Apr 10, 2025 by Wilco-N
5
Availability of ftree-export CLI tool for batch export of fragmentation trees
#247 opened Apr 9, 2025 by tezeng
[BUG] - Unable to consistently create custom-db with CLI probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#246 opened Apr 8, 2025 by yzhouchen0426
2
Clearly different durations and annotation rates for the same mgf file - why? probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#245 opened Apr 2, 2025 by fsatfu
7
[BUG] - Too many fragments, cancel fragmentation process probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#244 opened Mar 27, 2025 by CujoChenFuyoh
1
[BUG] - mzML file import error awaiting input State of waiting for data and description to reproduce an issue probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#241 opened Feb 18, 2025 by Sjors455
2
[BUG] - always reporting "No prediction jobs finished. Waiting before retry 1.0s" probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#240 opened Feb 17, 2025 by AnqiXiong
1
[BUG] - Summary files not being created awaiting input State of waiting for data and description to reproduce an issue probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#239 opened Feb 10, 2025 by typewritermonkey
1
[BUG] - Data Import Failed awaiting input State of waiting for data and description to reproduce an issue probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced
#238 opened Feb 9, 2025 by typewritermonkey
12
[QUESTION] How to adapt import tolerance/ What is the difference between the MS1MassDeviationsubparts? Selected for Development Mark if this issue has been linked to an internal development issue.
#235 opened Jan 17, 2025 by Adafede
4
ProTip! What’s not been updated in a month: updated:<2025-05-14.