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68 Open 155 Closed
68 Open 155 Closed
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Issues list

Suggestion to update tutorial: deprecated pandas2ri.activate() and sparse matrix conversion for SoupX bug Something isn't working
#374 opened May 27, 2025 by liberentaizp
@seohyonkim
4
Add a checklist when creating a PR enhancement New feature or request
#373 opened May 14, 2025 by LuisHeinzlmeier
1
Improve structure of flipcards and mc questions enhancement New feature or request
#370 opened May 12, 2025 by LuisHeinzlmeier
@seohyonkim
Add negative binomial distribution dropdown enhancement New feature or request
#369 opened May 12, 2025 by LuisHeinzlmeier
@LuisHeinzlmeier
Change image formats to PDF enhancement New feature or request
#366 opened May 6, 2025 by LuisHeinzlmeier
@LuisHeinzlmeier
Add open dropdowns for pdf build enhancement New feature or request
#365 opened May 6, 2025 by LuisHeinzlmeier
@LuisHeinzlmeier
Minor bug report: p-values can not be zero bug Something isn't working documentation Improvements or additions to documentation
#364 opened May 5, 2025 by soerenab
Adjacency matrix calculation for spatial domains question Further information is requested
#362 opened Apr 26, 2025 by 11e11
Ensure that PR previews also deploy on forked repositories bug Something isn't working
#359 opened Apr 22, 2025 by Zethson
@LuisHeinzlmeier
2
Proposing to add mLLMCelltype as a best practice for cell type annotation enhancement New feature or request
#354 opened Apr 18, 2025 by cafferychen777
@Zethson
6
Compatibility between simpleaf quant (spliceu mode) outputs and SoupX question Further information is requested
#350 opened Mar 26, 2025 by cave-beetle
question about Chapter16.4 Pseudobulk making code bug Something isn't working
#339 opened Feb 19, 2025 by dfc-1931475
1
Create a style guide enhancement New feature or request
#337 opened Feb 18, 2025 by LuisHeinzlmeier
1
@LuisHeinzlmeier
Missing yml files for every chapter/notebook enhancement New feature or request
#336 opened Feb 17, 2025 by LuisHeinzlmeier
File format chapter enhancement New feature or request
#334 opened Feb 15, 2025 by LuisHeinzlmeier
1
Verbosity Level bug Something isn't working
#332 opened Feb 14, 2025 by DarioS
@seohyonkim
1
Add SpatialData & squidpy tutorial to Analysis tools enhancement New feature or request
#330 opened Feb 7, 2025 by Zethson
3 of 6 tasks
@LuisHeinzlmeier
Outdated environemnt files bug Something isn't working
#319 opened Jan 20, 2025 by VladimirShitov
2
Issue on page /cellular_structure/integration.html
#308 opened Jan 5, 2025 by qinxiaoy
Issue on page /preprocessing_visualization/quality_control.html
#306 opened Nov 12, 2024 by jffpviana
Downstream analysis for sn-ATACseq is not shown in the contents? question Further information is requested
#304 opened Nov 10, 2024 by zyll123
Have hide-output and expandable cells enhancement New feature or request
#299 opened Sep 21, 2024 by Zethson
Filter rarely expressed genes/features? question Further information is requested
#298 opened Sep 17, 2024 by kloot
Question about the ambient RNA correction question Further information is requested
#296 opened Aug 22, 2024 by Chaosli98
@seohyonkim
1
Usage of pvals for volcano plots instead of FDR-corrected p-values question Further information is requested
#295 opened Aug 21, 2024 by ramadatta
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