WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
R package for DNA methylation analysis
A tool for discovering Differentially Methylated Regions
R package for DNA Methylation Analysis (and Gene Expression Integration) for Illumina Infinium Array and BS-Seq Data
The MeRIP-seq data analysis tutorial is structured into four submodules, designed to comprehensively guide users through the complete workflow for RNA methylation analysis
Pipeline for differential DNA methylation analysis
Differential methylation analysis pipeline using Illumina 450k array data from GEO (GSE42861). Includes preprocessing, QC, normalization, limma-based DMP detection, annotation, and visualization (volcano plot, MA plot, PCA). Built in R for reproducibility and educational use.
Integrative Cell-Type-Specific Differential Methylation Analysis Pipeline
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