kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

Bioinformatics 101 tool for counting unique k-length substrings in DNA

Count kmers with a more efficient (faster) hash table

k-mer similarity analysis pipeline

fast and comprehensive k-mer counting package

Very large scale k-mer counting and analysis on Apache Spark.

Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

🧮 🔢 Generate multi-sample k-mer count matrix from WGS

K-mer counting algorithms and count-data utilities for the BioJulia framework

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species

DNA classifier using Natural Language Processing. Used K-mer method to convert sequence strings into fixed size words

Pangenome openness from k-mers or genes

A seed-based homology searching tool

Minimizer counting and analysis

Represents sequences files in fasta format in terms of their kmer counts.

Counting Bloom Filter Algorithm to count kmers

NBC-Based Novelty Detection in Multi-Level Taxonomy

fast and lightweight counting of short k-mers

Implementation of k-mer counting algorithms BFCounter and experimental implementation of Misra-Gries. The goal is to use as little memory as possible.