JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
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Jul 15, 2025 - JavaScript
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protein-annotation
Here are 14 public repositories matching this topic...
ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model
protein-annotation protein-alignment contrastive-learning protein-language-model sequence-structure proteinclip protein-clip protein-text protein-text-search protein-natural-language-search
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Oct 31, 2025 - Python
A software package for computing features of peptides and proteins
bioinformatics machine-learning-algorithms protein-annotation amino-acid-composition function-annotation pssm-profile
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Jun 7, 2024 - Python
Exploring Evolution-aware & free protein language models as protein function predictors
benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding
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Sep 28, 2024 - Python
A package to annotate protein sequences
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Feb 23, 2025 - Python
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
genetics proteins gene-annotation genes pathogenicity variant-annotations protein-domains pathogenic-variants protein-annotation genetic-tolerance domain-homology variant-interpretation
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Jul 1, 2025 - Python
CoKE: a context-driven paradigm for Scientific LLMs, demonstrating that structured, high-level knowledge is more effective than raw biomolecular sequences for understanding and reasoning.
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Nov 7, 2025 - Python
Tool for similarity analysis of protein function annotations.
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Mar 2, 2022 - Python
An ensemble method for predicting proteins secreted via exosomes
bioinformatics machine-learning-algorithms protein-annotation subcellular-location-prediction exosomal-proteins
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Oct 10, 2023 - Python
Novel method for specific metal-binding sites prediction with known 3D structure.
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Jan 22, 2021 - Python
an assortment of bioinformatics inspired Python scripts
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Apr 15, 2017 - Python
React webapp to submit and retrieve jobs from Deciphon – a protein prediction tool for nanopore reads
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Nov 11, 2024 - JavaScript
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