Protein Graph Library

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

A comprehensive library for computational molecular biology

A dependency-free cross-platform swiss army knife for PDB files.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

An all-atom protein structure dataset for machine learning.

macromolecular crystallography library and utilities

C-library for calculating Solvent Accessible Surface Areas

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

RiboNucleic Acid (RNA) Language Model

A curated list of awesome computational cryo-EM methods.

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Predicting protein structure through sequence modeling

VSCode Extension for interactively visualising protein structure data in the editor

A Python framework for structural systems biology

Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)

A Julia package to read, write and manipulate macromolecular structures

This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)