Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
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May 6, 2025 - Nextflow
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xengsort
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🧬 Analyze spatial gene expression in cancer tissues with this automated Python pipeline, uncovering insights into tumor microenvironments and biological regions.
workflow rna-seq image-processing project scrna-seq transcriptomics microscopy st recode cancer-research data-science-projects rna-velocity xenome easi-fish ibm-platform-lsf he-stained-wsi xengsort species-deconvolution
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Nov 10, 2025 - Python
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