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1. ETNA ETNA Public

   Embeddings to Network Alignment - align biological networks between two species

   Python 9 4

2. flambe flambe Public

   datasets for tissue and tool named entity recognition, annotation files for biological workflow extraction, and disambiguation files

   Jupyter Notebook 4

3. seismic seismic Public

   Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data

   R 15 4

4. gene-embedding-benchmarks gene-embedding-benchmarks Public

   Benchmarking gene embeddings on single, paired, and gene set tasks

   Python 10

5. ALPINE ALPINE Public

   ALPINE is a semi-supervised non-negative matrix factorization (NMF) framework designed to effectively distinguish between multiple phenotypic conditions based on shared biological factors, while al…

   Python 4 1