Repositories list

• MBARI-BOG-18Sv9-metabarcoding-pcr-protocol

  Public
  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

• MBON-Protocols

  Public
  In lab and out of lab protocols for MBON eDNA collection and processing

  obon-bebop

  1•2•0•0•Updated Jun 5, 2025Jun 5, 2025

• MBARI-BOG-12S-classic-metabarcoding-pcr-protocol

  Public
  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Apr 25, 2025Apr 25, 2025

• MBARI-BOG-12S-touchdown-metabarcoding-pcr-protocol

  Public
  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

• MBARI-BOG-COI-metabarcoding-pcr-protocol

  Public
  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

• MBARI-BOG-QiagenDNeasy96-BT-DNA-Extraction-Protocol

  Public
  MIT License

  •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

• BOG-Banzai-Dada2-Pipeline

  Public
  Bioinformatic pipeline for processing amplicon data using Dada2.

  Shell

  •0•3•0•0•Updated Mar 3, 2025Mar 3, 2025

• SoundSequenceDVM

  Public
  Data and code for the analysis of 12S data from the 2019 Spring CANON cruise

  Jupyter Notebook

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• CN19S_12S

  Public
  Data and code for the analysis of 12S samples from the CN19S cruise with the goal to examine:

  Jupyter Notebook

  •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• KOSMOS_eDNA_paper

  Public
  Data and analytical code for the KOSMOS eDNA paper

  HTML

  •0•0•0•0•Updated Mar 7, 2023Mar 7, 2023

• ESP_CTD

  Public
  A repository for the code for the metabarcoding comparison of ESP and CTD eDNA samples.

  HTML

  •0•0•0•0•Updated Jan 1, 2022Jan 1, 2022

• SeqAtSea

  Public
  Data and analysis for the eDNA Sequencing at Sea Paper

  0•0•0•0•Updated Sep 30, 2021Sep 30, 2021